My Y DNA Private Variants

I am shown to have 10 Private variants in Y Chromosome. I checked them in gnomAD browser. 9 of the 10 were found. All of those 9 have 1 person that has the variant, and they are all from the African/African American group. Y-4689310-A-T has a CADD score of 11.9, and it is an intergenic variant. The CADD score is quite high for an intergenic variant.

Y-13205377-C-G

Intergenic variant, Enhancer according to Encode

0.002988% (1 out of 33,470)

4.74

https://gnomad.broadinstitute.org/variant/Y-13205377-C-G?dataset=gnomad_r4

Y-13408427-T-C

Intronic variant (18 transcripts)

UTY ( (Ubiquitously Transcribed Tetratricopeptide Repeat Containing, Y-Linked)

https://www.genecards.org/cgi-bin/carddisp.pl?gene=UTY

0.00308% (1 out of 32,469)

5.07

https://gnomad.broadinstitute.org/variant/Y-13408427-T-C?dataset=gnomad_r4

Y-14386154-T-C

Intergenic variant

0.002982% (1 out of 33,529)

4.00

https://gnomad.broadinstitute.org/variant/Y-14386154-T-C?dataset=gnomad_r4

Y-16016460-G-C

Intergenic variant

0.002985% (1 out of 33,504)

1.63

https://gnomad.broadinstitute.org/variant/Y-16016460-G-C?dataset=gnomad_r4

Y-20620799-G-A

Intergenic variant

0.003023% (1 out of 33,081)

2.39

https://gnomad.broadinstitute.org/variant/Y-20620799-G-A?dataset=gnomad_r4

Y-26639245-G-A

A=0.00 (1 out of 15,951 (0,006 %) - GnomAD)

2.34

https://www.ncbi.nlm.nih.gov/snp/rs2090426010

Y-4689310-A-T

Intergenic

0.003051% (1 out of 32,780)

11.9

https://gnomad.broadinstitute.org/variant/Y-4689310-A-T?dataset=gnomad_r4

Y-6988012-G-A

Intronic variant (3 transcripts)

TBL1Y (Transducin Beta Like 1 Y-Linked)

https://www.genecards.org/cgi-bin/carddisp.pl?gene=TBL1Y

0.003008% (1 out of 33,249)

0.943

https://gnomad.broadinstitute.org/variant/Y-6988012-G-A?dataset=gnomad_r4

Y-7293460-A-G

Intronic variant (2 transcripts)

PRKY (Protein Kinase Y-Linked) pseudogene

https://www.genecards.org/cgi-bin/carddisp.pl?gene=PRKY

0.003188% (1 out of 31,372)

5.21

https://gnomad.broadinstitute.org/variant/Y-7293460-A-G?dataset=gnomad_r4

Y-7786073-C-T

Intronic variant (3 transcripts)

RFTN1P1 (Raft-Linking Protein Pseudogene)

https://www.genecards.org/cgi-bin/carddisp.pl?gene=RFTN1P1

0.003011% (1 out of 33,217)

0.195

https://gnomad.broadinstitute.org/variant/Y-7786073-C-T?dataset=gnomad_r4

Comments

My Maternal Puerto Rican Ancestry

My maternal grandfather's maternal grandfather Joseph John Ocasio was Puerto Rican. He was born in Utuado, Puerto Rico and died in Sebastopol, Sonoma County, California. His parents were Juan Bautista Ocasio-Ramos and Maria del Carmen Afanador-Baez. He was married to Maria Pereira who was a Hawaiian born daughter of immigrants from the Atlantic archipelago Madeira which is an autonomous region of Portugal. They relocated to Sonoma County where my maternal grandmother's mother Marion Isabelle Ocasio was born. Great Grandma Marian married my Great Grandfather Peter Andrews (originally Andrade) who was born in Yolo County, California. His parents immigrated from the Atlantic archipelago Cape Verde before it gained its independence from Portugal. 2nd Great Grandpa Joe's known ancestral surnames: Ocasio, Afanador, Ramos, Baez, Maldonado, Rivera, Guzman, and Mercado 2nd Great Grandpa Joe's brickwall ancestors (ancestors with parents unknown) his pate...

My NativeDNA Results

This is a review about my NativeDNA results My Genealogical Ancestry I am a multicontinental American that is highly multiethnic, and I am related to many of my fellow Americans in many different ways. My paternal grandfather's father's ancestry was African American. He had some European ancestry. My paternal grandfather's mother's ancestry was African American. My paternal grandmother's father's ancestry was African American. He had some European ancestry. My paternal grandmother's mother's ancestry was African American with English, Acadian (French in what now known as Nova Scotia), Polish, Swiss, and German. All of my paternal 3rd great grandparents were African American slaves in Southern Louisiana with the exception of my paternal grandmother's maternal grandfather's father who was a European American son of an English American plantation owner born in Gates County, North Carolinia and a 3/4 Acadian woman born in Assumption Parish in...

MyHeritage Update For My Mother, My Paternal Aunt, and Me

MyHeritage's Ethnicity Estimate updated their ethnic analyses again. My mother's ethnic analysis and my paternal aunt's ethnic analysis were finally updated. During over a decade, I have learned to take ethnic analyses with a strong grain of salt and focus mainly on DNA relative matches. My Genealogical Ancestry I am a multicontinental American that is highly multiethnic, and I am related to many of my fellow Americans in many different ways. My paternal grandfather's father's ancestry was African American. He had some European ancestry. My paternal grandfather's mother's ancestry was African American. My paternal grandmother's father's ancestry was African American. He had some European ancestry. My paternal grandmother's mother's ancestry was African American with English, Acadian (French in what now known as Nova Scotia), Polish, Swiss, and German. All four of my paternal great grandparents were born in the Acadiana region in Sout...

Diverse Genes

Search This Blog